Phylogeny and Evolution using Bioinformatics

Course materials


Printed copies of all lecture handouts are distributed at the beginning of the course!

  • Phylogenic trees, Parsimony, Distance methods (pdf)
  • Markov models in molecular phylogeny and evolution (pdf)
  • Likelihood methods (pdf)
  • Bayesian methods (pdf)
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    Software


    Links to the softwares used during the course :
  • MEGA: Molecular Evolutionary Genetics Analysis
  • Jalview: a multiple alignment editor
  • Phylogenetic Analysis by Maximum Likelihood (PAML)
  • NJplot
  • PhyML
  • Phylip/DNAMl
  • MrBayes

  • List of virtually all phylogeny programs


  • Evalutation


  • Course Evaluation