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BLAST2.0 Parameters limitations
Valid combinations of gap opening and extension penalties
ex: for Blosum62, gap open=9 and gap exten=2 is allowed, but not gap open=10
With a non-valid combination, BLAST always returns " ***** No hits found ****** " !
| gap extension -> | 1 | 2 | 3 |
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| 3 | Pam30 | ||
| 4 | Pam30, Pam70 | ||
| 5 | Pam30 | Pam30, Pam70 | |
| 6 | Pam30, Pam70 Blosum80, Blosum90 |
Pam70 | |
| 7 | Pam30, Pam70 Blosum80, Blosum90, Blosum62 |
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| 8 | Pam30 | Pam70, Blosum80, Blosum90, Blosum62 | |
| 9 | Pam30, Pam70 Blosum80, Blosum90 |
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| 10 | Pam30, Pam70 Blosum80, Blosum90, Blosum62 |
Blosum45, Blosum50 |
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| 11 | Pam70, Blosum80, Blosum90, Blosum62 |
Blosum45, Blosum50 |
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| 12 |
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Blosum45, Blosum50 |
Blosum45, Blosum50 |
| 13 |
Blosum45, Blosum50 |
Blosum45 |
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| 14 |
Blosum45, Blosum50 |
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| 15 |
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Blosum45, Blosum50 |
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| 16 |
Blosum45, Blosum50 |
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| 17 |
Blosum45, Blosum50 |
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| 18 |
Blosum45, Blosum50 |
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| 19 |
Blosum45 |